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1

Thermodynamic and computational studies of DNA triple helices containing a nucleotide or a non-nucleotide linker in the third strand

Concetta Giancola, Luigi Petraccone, Maria Pieri, Guido Barone

Journal:

Biophysical Chemistry

Année:

2001

Langue:

english

Fichier:

PDF, 598 KB

english, 2001

2

G-quadruplex unfolding in higher-order DNA structures

Fotticchia, Iolanda, Giancola, Concetta, Petraccone, Luigi

Journal:

Chemical Communications

Année:

2013

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2013

3

Stability and Structure of Telomeric DNA Sequences Forming Quadruplexes Containing Four G-Tetrads with Different Topological Arrangements †

Petraccone, Luigi, Erra, Eva, Esposito, Veronica, Randazzo, Antonio, Mayol, Luciano, Nasti, Lucia, Barone, Guido, Giancola, Concetta

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 116 KB

english, 2004

4

Biophysical properties of quadruple helices of modified human telomeric DNA

Luigi Petraccone, Eva Erra, Veronica Esposito, Antonio Randazzo, Aldo Galeone, Guido Barone, Concetta Giancola

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 293 KB

english, 2005

5

Energetic aspects of locked nucleic acids quadruplex association and dissociation

Luigi Petraccone, Eva Erra, Antonio Randazzo, Concetta Giancola

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 384 KB

english, 2006

6

An integrated molecular dynamics (MD) and experimental study of higher order human telomeric quadruplexes

Luigi Petraccone, Nichola C. Garbett, Jonathan B. Chaires, John O. Trent

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1020 KB

english, 2010

7

1H-NMR Study of the Quadruplex [d(TGGGT)]4 Containing a Modified Thymine

Luigi Petraccone, Eva Erra, Lucia Nasti, Aldo Galeone, Antonio Randazzo, Veronica Esposito, Luciano Mayol, Guido Barone, Concetta Giancola

Journal:

Année:

2004

Fichier:

PDF, 56 KB

2004

8

Synthesis and Structural Characterization of PNA-DNA Quadruplex-Forming Chimeras

Veronica Esposito, Antonio Randazzo, Anna Messere, Aldo Galeone, Luigi Petraccone, Concetta Giancola, Gennaro Piccialli, Luciano Mayol

Journal:

European Journal of Organic Chemistry

Année:

2003

Langue:

english

Fichier:

PDF, 321 KB

english, 2003

9

Linkage of proton binding to the thermal dissociation of triple helix complex

Luigi Petraccone, Eva Erra, Carlo Andrea Mattia, Vito Fedullo, Guido Barone, Concetta Giancola

Journal:

Biophysical Chemistry

Année:

2004

Langue:

english

Fichier:

PDF, 165 KB

english, 2004

10

Simultaneous effect of cadaverine and osmolytes on ct-DNA thermal stability

Luigi Petraccone, Salvatore Baiano, Gabriella Fiorentino, Guido Barone, Concetta Giancola

Journal:

Thermochimica Acta

Année:

2004

Langue:

english

Fichier:

PDF, 116 KB

english, 2004

11

Thermodynamic and conformational properties of DNA triplexes containing 3′,3′-phosphodiester bond

Concetta Giancola, Maria Pieri, Luigi Petraccone, Daniela Montesarchio, Guido Barone

Journal:

Thermochimica Acta

Année:

2001

Langue:

english

Fichier:

PDF, 198 KB

english, 2001

12

Oligonucleotides containing a lysine residue as 3′–3′ junction for alternate strand triple helix formation

Guido Barone, Lorenzo De Napoli, Giovanni Di Fabio, Concetta Giancola, Anna Messere, Daniela Montesarchio, Luigi Petraccone, Gennaro Piccialli

Journal:

Bioorganic & Medicinal Chemistry

Année:

2001

Langue:

english

Fichier:

PDF, 311 KB

english, 2001

13

Structure and Stability of Higher-Order Human Telomeric Quadruplexes

Petraccone, Luigi, Spink, Charles, Trent, John O., Garbett, Nichola C., Mekmaysy, Chongkham S., Giancola, Concetta, Chaires, Jonathan B.

Journal:

Journal of the American Chemical Society

Année:

2011

Langue:

english

Fichier:

PDF, 1012 KB

english, 2011

14

Structure-based drug design: From nucleic acid to membrane protein targets

Magdalena M. Dailey, Chayanendu Hait, Patrick A. Holt, Jon M. Maguire, Jason B. Meier, M. Clarke Miller, Luigi Petraccone, John O. Trent

Journal:

Experimental and Molecular Pathology

Année:

2009

Langue:

english

Fichier:

PDF, 902 KB

english, 2009

15

The Tail of the Telomere

Petraccone, Luigi, Trent, John O., Chaires, Jonathan B.

Journal:

Journal of the American Chemical Society

Année:

2008

Langue:

english

Fichier:

PDF, 647 KB

english, 2008

16

Binding properties of human telomeric quadruplex multimers: A new route for drug design

Annunziata Cummaro, Iolanda Fotticchia, Marco Franceschin, Concetta Giancola, Luigi Petraccone

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 727 KB

english, 2011

17

The triazatruxene derivative azatrux binds to the parallel form of the human telomeric G-quadruplex under molecular crowding conditions: Biophysical and molecular modeling studies

Luigi Petraccone, Iolanda Fotticchia, Annunziata Cummaro, Bruno Pagano, Luca Ginnari-Satriani, Shozeb Haider, Antonio Randazzo, Ettore Novellino, Stephen Neidle, Concetta Giancola

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2011

18

Physico-chemical analysis of G-quadruplex containing bunch-oligonucleotides

Luigi Petraccone, Luigi Martino, Ida Duro, Giorgia Oliviero, Nicola Borbone, Gennaro Piccialli, Concetta Giancola

Journal:

International Journal of Biological Macromolecules

Année:

2007

Langue:

english

Fichier:

PDF, 485 KB

english, 2007

19

Physico-chemical studies on DNA triplexes containing an alternate third strand with a non-nucleotide linker

Concetta Giancola, Luigi Petraccone, Maria Pieri, Lorenzo De Napoli, Daniela Montesarchio, Gennaro Piccialli, Guido Barone

Journal:

International Journal of Biological Macromolecules

Année:

2001

Langue:

english

Fichier:

PDF, 350 KB

english, 2001

20

Effect of a modified thymine on the structure and stability of [d(TGGGT)]4 quadruplex

Luigi Petraccone, Eva Erra, Lucia Nasti, Aldo Galeone, Antonio Randazzo, Luciano Mayol, Guido Barone, Concetta Giancola

Journal:

International Journal of Biological Macromolecules

Année:

2003

Langue:

english

Fichier:

PDF, 388 KB

english, 2003

21

Effect of O 6 -Methylguanine on the Stability of G-Quadruplex DNA

Mekmaysy, Chongkham S., Petraccone, Luigi, Garbett, Nichola C., Ragazzon, Patricia A., Gray, Robert, Trent, John O., Chaires, Jonathan B.

Journal:

Journal of the American Chemical Society

Année:

2008

Langue:

english

Fichier:

PDF, 431 KB

english, 2008

22

Characterization of a K + -Induced Conformational Switch in a Human Telomeric DNA Oligonucleotide Using 2-Aminopurine Fluorescence

Gray, Robert D., Petraccone, Luigi, Trent, John O., Chaires, Jonathan B.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 4.37 MB

english, 2010

23

Studying the effect of crowding and dehydration on DNA G-quadruplexes

Luigi Petraccone, Bruno Pagano, Concetta Giancola

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 591 KB

english, 2012

24

The abasic site lesions in the human telomeric sequence d[TA(G3T2A)3G3]: A thermodynamic point of view

Antonella Virgilio, Luigi Petraccone, Veronica Esposito, Giuseppe Citarella, Concetta Giancola, Aldo Galeone

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Année:

2012

Langue:

english

Fichier:

PDF, 719 KB

english, 2012

25

Role of disulfide bonds in conformational stability and folding of 5′-deoxy-5′-methylthioadenosine phosphorylase II from the hyperthermophilic archaeon Sulfolobus solfataricus

Giovanna Cacciapuoti, Francesca Fuccio, Luigi Petraccone, Pompea Del Vecchio, Marina Porcelli

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Année:

2012

Langue:

english

Fichier:

PDF, 622 KB

english, 2012

26

G-Quadruplexes from Human Telomeric DNA: How Many Conformations in PEG Containing Solutions?

Petraccone, Luigi, Malafronte, Anna, Amato, Jussara, Giancola, Concetta

Journal:

Journal of Physical Chemistry B

Année:

2012

Langue:

english

Fichier:

PDF, 2.28 MB

english, 2012

27

Differential scanning calorimetry to investigate G-quadruplexes structural stability

Pagano, Bruno, Randazzo, Antonio, Fotticchia, Iolanda, Novellino, Ettore, Petraccone, Luigi, Giancola, Concetta

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 905 KB

english, 2013

28

Synthesis, Biophysical Characterization, and Anti-HIV Activity of Glyco-Conjugated G-Quadruplex-Forming Oligonucleotides

D’Onofrio, Jennifer, Petraccone, Luigi, Martino, Luigi, Fabio, Giovanni Di, Iadonisi, Alfonso, Balzarini, Jan, Giancola, Concetta, Montesarchio, Daniela

Journal:

Bioconjugate Chemistry

Année:

2008

Langue:

english

Fichier:

PDF, 235 KB

english, 2008

29

5‘-Modified G-Quadruplex Forming Oligonucleotides Endowed with Anti-HIV Activity: Synthesis and Biophysical Properties

D'Onofrio, Jennifer, Petraccone, Luigi, Erra, Eva, Martino, Luigi, Di Fabio, Giovanni, De Napoli, Lorenzo, Giancola, Concetta, Montesarchio, Daniela

Journal:

Bioconjugate Chemistry

Année:

2007

Langue:

english

Fichier:

PDF, 502 KB

english, 2007

30

Fluorescence Enhancement upon G-Quadruplex Folding: Synthesis, Structure, and Biophysical Characterization of a Dansyl/Cyclodextrin-Tagged Thrombin Binding Aptamer

De Tito, Stefano, Morvan, François, Meyer, Albert, Vasseur, Jean-Jacques, Cummaro, Annunziata, Petraccone, Luigi, Pagano, Bruno, Novellino, Ettore, Randazzo, Antonio, Giancola, Concetta, Montesarchio,

Journal:

Bioconjugate Chemistry

Année:

2013

Langue:

english

Fichier:

PDF, 743 KB

english, 2013

31

INTERACTION OF PORPHYRIN WITH G-QUADRUPLEX STRUCTURES

Erra, Eva, Petraccone, Luigi, Esposito, Veronica, Randazzo, Antonio, Mayol, Luciano, Ladbury, John, Barone, Guido, Giancola, Concetta

Journal:

Nucleosides Nucleotides & Nucleic Acids

Année:

2005

Langue:

english

Fichier:

PDF, 135 KB

english, 2005

32

Conformational stability and ligand binding properties of BldR, a member of the MarR family, from Sulfolobus solfataricus

Fiorentino, Gabriella, Del Giudice, Immacolata, Petraccone, Luigi, Bartolucci, Simonetta, Del Vecchio, Pompea

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Année:

2014

Langue:

english

Fichier:

PDF, 816 KB

english, 2014

33

PNA as a potential modulator of COL7A1 gene expression in dominant dystrophic epidermolysis bullosa: a physico-chemical study

Amato, Jussara, Stellato, Marco Ignazio, Pizzo, Elio, Petraccone, Luigi, Oliviero, Giorgia, Borbone, Nicola, Piccialli, Gennaro, Orecchia, Angela, Bellei, Barbara, Castiglia, Daniele, Giancola, Concet

Journal:

Molecular BioSystems

Année:

2013

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2013

34

Synthesis and Characterization of Monomolecular DNA G-Quadruplexes Formed by Tetra-End-Linked Oligonucleotides

Oliviero, Giorgia, Amato, Jussara, Borbone, Nicola, Galeone, Aldo, Petraccone, Luigi, Varra, Michela, Piccialli, Gennaro, Mayol, Luciano

Journal:

Bioconjugate Chemistry

Année:

2006

Langue:

english

Fichier:

PDF, 598 KB

english, 2006

35

Thermodynamics and Kinetics of PNA−DNA Quadruplex-Forming Chimeras

Petraccone, Luigi, Pagano, Bruno, Esposito, Veronica, Randazzo, Antonio, Piccialli, Gennaro, Barone, Guido, Mattia, Carlo A., Giancola, Concetta

Journal:

Journal of the American Chemical Society

Année:

2005

Langue:

english

Fichier:

PDF, 403 KB

english, 2005

36

Effects of an 8-bromodeoxyguanosine incorporation on the parallel quadruplex structure [d(TGGGT)]4

Esposito, Veronica, Randazzo, Antonio, Piccialli, Gennaro, Petraccone, Luigi, Giancola, Concetta, Mayol, Luciano

Journal:

Organic & Biomolecular Chemistry

Année:

2004

Langue:

english

Fichier:

PDF, 313 KB

english, 2004

37

Biophysical Properties of Quadruplexes Containing Two or Three 8-Bromodeoxyguanosine Residues

Petraccone, Luigi, Duro, Ida, Randazzo, Antonio, Virno, Ada, Mayol, Luciano, Giancola, Concetta

Journal:

Nucleosides Nucleotides & Nucleic Acids

Année:

2007

Langue:

english

Fichier:

PDF, 215 KB

english, 2007

38

1 H-NMR Study of the Quadruplex [d(TGGGT)] 4 Containing a Modified Thymine

Petraccone, Luigi, Erra, Eva, Nasti, Lucia, Galeone, Aldo, Randazzo, Antonio, Esposito, Veronica, Mayol, Luciano, Barone, Guido, Giancola, Concetta

Journal:

Nucleosides Nucleotides & Nucleic Acids

Année:

2003

Langue:

english

Fichier:

PDF, 213 KB

english, 2003

39

RELATIVE STABILITY OF QUADRUPLEXES CONTAINING DIFFERENT NUMBER OF G-TETRADS

Petraccone, Luigi, Erra, Eva, Duro, Ida, Esposito, Veronica, Randazzo, Antonio, Mayol, Luciano, Mattia, Carlo Andrea, Barone, Guido, Giancola, Concetta

Journal:

Nucleosides Nucleotides & Nucleic Acids

Année:

2005

Langue:

english

Fichier:

PDF, 176 KB

english, 2005

40

A thermodynamic signature of lipid segregation in biomembranes induced by a short peptide derived from glycoprotein gp36 of feline immunodeficiency virus

Oliva, Rosario, Del Vecchio, Pompea, Stellato, Marco Ignazio, D'Ursi, Anna Maria, D'Errico, Gerardino, Paduano, Luigi, Petraccone, Luigi

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Année:

2015

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2015

41

MOLECULAR MODELING STUDIES OF A PARALLEL STRANDED QUADRUPLEXES CONTAINING A 8-BROMOADENOSINE

Esposito, Veronica, Randazzo, Antonio, Petraccone, Luigi, Giancola, Concetta, Erra, Eva, Virgilio, Antonella, Mayol, Luciano

Journal:

Nucleosides Nucleotides & Nucleic Acids

Année:

2005

Langue:

english

Fichier:

PDF, 221 KB

english, 2005

42

5-Hydroxymethyl-2′-Deoxyuridine Residues in the Thrombin Binding Aptamer: Investigating Anticoagulant Activity by Making a Tiny Chemical Modification

Virgilio, Antonella, Petraccone, Luigi, Scuotto, Maria, Vellecco, Valentina, Bucci, Mariarosaria, Mayol, Luciano, Varra, Michela, Esposito, Veronica, Galeone, Aldo

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 672 KB

english, 2014

43

Differential thermodynamic behaviours of the extra-cellular regions of two Ser/Thr PrkC kinases revealed by calorimetric studies

Berisio, Rita, Squeglia, Flavia, Ruggiero, Alessia, Petraccone, Luigi, Stellato, Marco Ignazio, Del Vecchio, Pompea

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Année:

2015

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2015

44

How are thermodynamically stable G-quadruplex–duplex hybrids?

Fotticchia, Iolanda, Amato, Jussara, Pagano, Bruno, Novellino, Ettore, Petraccone, Luigi, Giancola, Concetta

Journal:

Journal of Thermal Analysis and Calorimetry

Année:

2015

Langue:

english

Fichier:

PDF, 798 KB

english, 2015

45

The oxidative damage to the human telomere: effects of 5-hydroxymethyl-2′-deoxyuridine on telomeric G-quadruplex structures

Virgilio, Antonella, Esposito, Veronica, Mayol, Luciano, Giancola, Concetta, Petraccone, Luigi, Galeone, Aldo

Journal:

Organic & Biomolecular Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 1.91 MB

english, 2015

46

Effect of the Incorporation of 2′-Deoxy-8-(Hydroxyl)Adenosine on the Stability of Quadruplexes Formed by Modified Human Telomeric DNA

Petraccone, Luigi, Duro, Ida, Erra, Eva, Randazzo, Antonio, Virno, Ada, Giancola, Concetta

Journal:

Nucleosides Nucleotides & Nucleic Acids

Année:

2007

Langue:

english

Fichier:

PDF, 251 KB

english, 2007

47

Site-specific replacement of the thymine methyl group by fluorine in thrombin binding aptamer significantly improves structural stability and anticoagulant activity

Virgilio, Antonella, Petraccone, Luigi, Vellecco, Valentina, Bucci, Mariarosaria, Varra, Michela, Irace, Carlo, Santamaria, Rita, Pepe, Antonietta, Mayol, Luciano, Esposito, Veronica, Galeone, Aldo

Journal:

Nucleic Acids Research

Année:

2015

Langue:

english

Fichier:

PDF, 1.74 MB

english, 2015

48

On the microscopic and mesoscopic perturbations of lipid bilayers upon interaction with the MPER domain of the HIV glycoprotein gp41

Oliva, Rosario, Emendato, Alessandro, Vitiello, Giuseppe, De Santis, Augusta, Grimaldi, Manuela, D'Ursi, Anna Maria, Busi, Elena, Del Vecchio, Pompea, Petraccone, Luigi, D'Errico, Gerardino

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Année:

2016

Langue:

english

Fichier:

PDF, 753 KB

english, 2016

49

State-of-the-Art Methodologies for the Discovery and Characterization of DNA G-Quadruplex Binders

Pagano, Bruno, Cosconati, Sandro, Gabelica, Valerie, Petraccone, Luigi, De Tito, Stefano, Marinelli, Luciana, La Pietra, Valeria, Saverio di Leva, Francesco, Lauri, Ilaria, Trotta, Roberta, Novellino,

Journal:

Current Pharmaceutical Design

Année:

2012

Langue:

english

Fichier:

PDF, 961 KB

english, 2012

50

IMPROVED THROMBIN BINDING APTAMER ANALOGUES CONTAINING INVERSION OF POLARITY SITES: STRUCTURAL EFFECTS OF EXTRA-RESIDUES AT THE ENDS

Galeone, Aldo, Virgilio, Antonella, Amato, Teresa, Petraccone, Luigi, Filosa, Rosanna, Varra, Michela, Mayol, Luciano, Esposito, Veronica

Journal:

Organic & Biomolecular Chemistry

Année:

2016

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2016